Detailed information of SNP:
|
SNP ID:
sf0518840726(Gbrowse)
Chromosome: chr05 Position: 18840726 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.50% | 46.50% |
| All Indica | 795 | 34.09% | 65.91% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 56.53% | 43.47% |
| Indica II | 210 | 13.81% | 86.19% |
| Indica Intermediate | 210 | 14.29% | 85.71% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518840726 | C->T | INTERGENIC | None |