Detailed information of SNP:
|
SNP ID:
sf0518864398(Gbrowse)
Chromosome: chr05 Position: 18864398 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 92.58% | 7.42% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518864398 | A->G | INTERGENIC | None |