Detailed information of SNP:
|
SNP ID:
sf0518883835(Gbrowse)
Chromosome: chr05 Position: 18883835 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.27% | 4.73% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518883835 | C->T | LOC_Os05g32450(LOC_Os05g32450.1) | Synonymous |