Detailed information of SNP:
|
SNP ID:
sf0518901346(Gbrowse)
Chromosome: chr05 Position: 18901346 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 78.77% | 21.23% |
| All Indica | 782 | 83.76% | 16.24% |
| All Japonica | 495 | 79.80% | 20.20% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 366 | 92.35% | 7.65% |
| Indica II | 210 | 67.14% | 32.86% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518901346 | A->G | LOC_Os05g32470(LOC_Os05g32470.1) | Non-Synonymous SNP |