Detailed information of SNP:
|
SNP ID:
sf0518902148(Gbrowse)
Chromosome: chr05 Position: 18902148 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.59% | 12.41% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518902148 | G->A | LOC_Os05g32470(LOC_Os05g32470.1) | INTRON |