Detailed information of SNP:
|
SNP ID:
sf0518902268(Gbrowse)
Chromosome: chr05 Position: 18902268 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 83.26% | 16.74% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 496 | 80.85% | 19.15% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518902268 | T->C | LOC_Os05g32470(LOC_Os05g32470.1) | INTRON |