Detailed information of SNP:
|
SNP ID:
sf0518903288(Gbrowse)
Chromosome: chr05 Position: 18903288 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 86.04% | 13.96% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518903288 | T->G | LOC_Os05g32470(LOC_Os05g32470.1) | INTRON |