Detailed information of SNP:
|
SNP ID:
sf0518922470(Gbrowse)
Chromosome: chr05 Position: 18922470 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.69% | 37.31% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518922470 | T->C | INTERGENIC | None |