Detailed information of SNP:
|
SNP ID:
sf0518968204(Gbrowse)
Chromosome: chr05 Position: 18968204 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1301 | 62.26% | 37.74% |
| All Indica | 745 | 39.46% | 60.54% |
| All Japonica | 442 | 95.48% | 4.52% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 343 | 50.73% | 49.27% |
| Indica II | 200 | 41.00% | 59.00% |
| Indica Intermediate | 202 | 18.81% | 81.19% |
| Temperate Japonica | 307 | 96.74% | 3.26% |
| Tropical Japonica | 79 | 92.41% | 7.59% |
| Japonica Intermediate | 56 | 92.86% | 7.14% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518968204 | T->G | LOC_Os05g32544(LOC_Os05g32544.1) | UTR_5_PRIME |
| sf0518968204 | T->G | LOC_Os05g32544(LOC_Os05g32544.2) | UTR_5_PRIME |