Detailed information of SNP:
|
SNP ID:
sf0518989807(Gbrowse)
Chromosome: chr05 Position: 18989807 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.12% | 37.88% |
| All Indica | 797 | 46.55% | 53.45% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 31.47% | 68.53% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518989807 | G->A | INTERGENIC | None |