Detailed information of SNP:
|
SNP ID:
sf0519017245(Gbrowse)
Chromosome: chr05 Position: 19017245 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1160 | 78.97% | 21.03% |
| All Indica | 577 | 69.32% | 30.68% |
| All Japonica | 466 | 99.14% | 0.86% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 220 | 62.73% | 37.27% |
| Indica II | 189 | 67.20% | 32.80% |
| Indica Intermediate | 168 | 80.36% | 19.64% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 70 | 95.71% | 4.29% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519017245 | A->T | INTERGENIC | None |