Detailed information of SNP:
|
SNP ID:
sf0519044247(Gbrowse)
Chromosome: chr05 Position: 19044247 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 62.91% | 37.09% |
| All Indica | 796 | 47.74% | 52.26% |
| All Japonica | 492 | 92.48% | 7.52% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 32.80% | 67.20% |
| Indica II | 211 | 59.24% | 40.76% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519044247 | T->C | INTERGENIC | None |