Detailed information of SNP:
|
SNP ID:
sf0519052745(Gbrowse)
Chromosome: chr05 Position: 19052745 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.09% | 3.91% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 484 | 88.64% | 11.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 90.83% | 9.17% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519052745 | G->A | LOC_Os05g32640(LOC_Os05g32640.1) | Synonymous |