Detailed information of SNP:
|
SNP ID:
sf0519055132(Gbrowse)
Chromosome: chr05 Position: 19055132 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.64% | 28.36% |
| All Indica | 795 | 54.59% | 45.41% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519055132 | C->T | INTERGENIC | None |