Detailed information of SNP:
|
SNP ID:
sf0519074250(Gbrowse)
Chromosome: chr05 Position: 19074250 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 76.70% | 23.30% |
| All Indica | 767 | 62.84% | 37.16% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 364 | 74.73% | 25.27% |
| Indica II | 207 | 49.76% | 50.24% |
| Indica Intermediate | 196 | 54.59% | 45.41% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519074250 | A->C | INTERGENIC | None |