Detailed information of SNP:
|
SNP ID:
sf0519091926(Gbrowse)
Chromosome: chr05 Position: 19091926 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1336 | 90.64% | 9.36% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 415 | 71.33% | 28.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 267 | 57.68% | 42.32% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519091926 | G->T | INTERGENIC | None |