Detailed information of SNP:
|
SNP ID:
sf0519096633(Gbrowse)
Chromosome: chr05 Position: 19096633 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.84% | 26.16% |
| All Indica | 799 | 57.57% | 42.43% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519096633 | C->T | INTERGENIC | None |