Detailed information of SNP:
|
SNP ID:
sf0519131444(Gbrowse)
Chromosome: chr05 Position: 19131444 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 76.36% | 23.64% |
| All Indica | 773 | 61.45% | 38.55% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 359 | 77.99% | 22.01% |
| Indica II | 211 | 47.39% | 52.61% |
| Indica Intermediate | 203 | 46.80% | 53.20% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519131444 | C->G | INTERGENIC | None |