Detailed information of SNP:
|
SNP ID:
sf0519135770(Gbrowse)
Chromosome: chr05 Position: 19135770 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 75.53% | 24.47% |
| All Indica | 795 | 60.63% | 39.37% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 373 | 72.65% | 27.35% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 209 | 52.63% | 47.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519135770 | G->A | INTERGENIC | None |