Detailed information of SNP:
|
SNP ID:
sf0519163633(Gbrowse)
Chromosome: chr05 Position: 19163633 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.82% | 47.18% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519163633 | G->A | INTERGENIC | None |