Detailed information of SNP:
|
SNP ID:
sf0519179773(Gbrowse)
Chromosome: chr05 Position: 19179773 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.03% | 42.97% |
| All Indica | 799 | 74.97% | 25.03% |
| All Japonica | 496 | 28.23% | 71.77% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519179773 | T->A | INTERGENIC | None |