Detailed information of SNP:
|
SNP ID:
sf0519180985(Gbrowse)
Chromosome: chr05 Position: 19180985 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.55% | 45.45% |
| All Indica | 798 | 70.68% | 29.32% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 81.28% | 18.72% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 20.60% | 79.40% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519180985 | G->A | INTERGENIC | None |