Detailed information of SNP:
|
SNP ID:
sf0519189709(Gbrowse)
Chromosome: chr05 Position: 19189709 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 98.25% | 1.75% |
| All Indica | 756 | 96.96% | 3.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 184 | 91.30% | 8.70% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519189709 | G->A | INTERGENIC | None |