Detailed information of SNP:
|
SNP ID:
sf0519219204(Gbrowse)
Chromosome: chr05 Position: 19219204 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 96.78% | 3.22% |
| All Indica | 772 | 95.34% | 4.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 47 | 91.49% | 8.51% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 189 | 83.07% | 16.93% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519219204 | C->T | INTERGENIC | None |