Detailed information of SNP:
|
SNP ID:
sf0519232964(Gbrowse)
Chromosome: chr05 Position: 19232964 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 95.09% | 4.91% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 488 | 87.91% | 12.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 90.61% | 9.39% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519232964 | G->T | LOC_Os05g32940(LOC_Os05g32940.1) | INTRON |