Detailed information of SNP:
|
SNP ID:
sf0519245852(Gbrowse)
Chromosome: chr05 Position: 19245852 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.46% | 36.54% |
| All Indica | 796 | 40.33% | 59.67% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 208 | 37.02% | 62.98% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519245852 | G->A | INTERGENIC | None |