Detailed information of SNP:
|
SNP ID:
sf0519329040(Gbrowse)
Chromosome: chr05 Position: 19329040 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 84.76% | 15.24% |
| All Indica | 792 | 76.52% | 23.48% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 208 | 57.21% | 42.79% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519329040 | C->T | INTERGENIC | None |