Detailed information of SNP:
|
SNP ID:
sf0519333718(Gbrowse)
Chromosome: chr05 Position: 19333718 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 70.94% | 29.06% |
| All Indica | 799 | 64.96% | 35.04% |
| All Japonica | 489 | 93.46% | 6.54% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 330 | 91.82% | 8.18% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519333718 | T->G | INTERGENIC | None |