Detailed information of SNP:
|
SNP ID:
sf0519342944(Gbrowse)
Chromosome: chr05 Position: 19342944 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 98.32% | 1.68% |
| All Indica | 748 | 97.19% | 2.81% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 97.18% | 2.82% |
| Indica II | 190 | 97.89% | 2.11% |
| Indica Intermediate | 203 | 96.55% | 3.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519342944 | A->C | LOC_Os05g33090(LOC_Os05g33090.1) | Synonymous |