Detailed information of SNP:



SNP ID: sf0519352350(Gbrowse)

Chromosome: chr05

Position: 19352350
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1376 88.81% 11.19%
All Indica799 99.87% 0.13%
All Japonica454 66.96% 33.04%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica297 62.96% 37.04%
Tropical Japonica93 87.10% 12.90%
Japonica Intermediate64 56.25% 43.75%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0519352350 C->T INTERGENIC None