Detailed information of SNP:
SNP ID:
sf0519352350(Gbrowse)
Chromosome: chr05 Position: 19352350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1376 | 88.81% | 11.19% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 454 | 66.96% | 33.04% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 297 | 62.96% | 37.04% |
Tropical Japonica | 93 | 87.10% | 12.90% |
Japonica Intermediate | 64 | 56.25% | 43.75% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0519352350 | C->T | INTERGENIC | None |