Detailed information of SNP:
|
SNP ID:
sf0519377909(Gbrowse)
Chromosome: chr05 Position: 19377909 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.32% | 18.68% |
| All Indica | 799 | 69.59% | 30.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519377909 | G->A | INTERGENIC | None |