Detailed information of SNP:
|
SNP ID:
sf0519378639(Gbrowse)
Chromosome: chr05 Position: 19378639 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 60.94% | 39.06% |
| All Indica | 788 | 45.69% | 54.31% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 370 | 32.97% | 67.03% |
| Indica II | 210 | 56.67% | 43.33% |
| Indica Intermediate | 208 | 57.21% | 42.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519378639 | C->A | INTERGENIC | None |