Detailed information of SNP:
|
SNP ID:
sf0519393553(Gbrowse)
Chromosome: chr05 Position: 19393553 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 94.30% | 5.70% |
| All Indica | 771 | 95.07% | 4.93% |
| All Japonica | 477 | 93.92% | 6.08% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 366 | 96.17% | 3.83% |
| Indica II | 202 | 96.04% | 3.96% |
| Indica Intermediate | 203 | 92.12% | 7.88% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 75 | 72.00% | 28.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519393553 | C->T | INTERGENIC | None |