Detailed information of SNP:
|
SNP ID:
sf0519399039(Gbrowse)
Chromosome: chr05 Position: 19399039 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 65.05% | 34.95% |
| All Indica | 760 | 94.34% | 5.66% |
| All Japonica | 490 | 18.78% | 81.22% |
| Aus | 63 | 60.32% | 39.68% |
| Indica I | 357 | 96.36% | 3.64% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 199 | 93.47% | 6.53% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519399039 | A->T | INTERGENIC | None |