Detailed information of SNP:
|
SNP ID:
sf0519434852(Gbrowse)
Chromosome: chr05 Position: 19434852 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.60% | 28.40% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519434852 | A->C | LOC_Os05g33260(LOC_Os05g33260.3) | UTR_3_PRIME |
| sf0519434852 | A->C | LOC_Os05g33260(LOC_Os05g33260.2) | UTR_3_PRIME |