Detailed information of SNP:
|
SNP ID:
sf0519435417(Gbrowse)
Chromosome: chr05 Position: 19435417 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.85% | 47.15% |
| All Indica | 799 | 68.84% | 31.16% |
| All Japonica | 497 | 20.52% | 79.48% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519435417 | C->A | INTERGENIC | None |