Detailed information of SNP:



SNP ID: sf0519447127(Gbrowse)

Chromosome: chr05

Position: 19447127
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 66.20% 33.80%
All Indica797 69.89% 30.11%
All Japonica496 56.05% 43.95%
Aus67 92.54% 7.46%
Indica I375 81.07% 18.93%
Indica II212 57.08% 42.92%
Indica Intermediate210 62.86% 37.14%
Temperate Japonica335 51.04% 48.96%
Tropical Japonica94 94.68% 5.32%
Japonica Intermediate67 26.87% 73.13%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 62.50% 37.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0519447127 C->T INTERGENIC None