Detailed information of SNP:
SNP ID:
sf0519447127(Gbrowse)
Chromosome: chr05 Position: 19447127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1414 | 66.20% | 33.80% |
All Indica | 797 | 69.89% | 30.11% |
All Japonica | 496 | 56.05% | 43.95% |
Aus | 67 | 92.54% | 7.46% |
Indica I | 375 | 81.07% | 18.93% |
Indica II | 212 | 57.08% | 42.92% |
Indica Intermediate | 210 | 62.86% | 37.14% |
Temperate Japonica | 335 | 51.04% | 48.96% |
Tropical Japonica | 94 | 94.68% | 5.32% |
Japonica Intermediate | 67 | 26.87% | 73.13% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0519447127 | C->T | INTERGENIC | None |