Detailed information of SNP:
|
SNP ID:
sf0519510509(Gbrowse)
Chromosome: chr05 Position: 19510509 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 89.20% | 10.80% |
| All Indica | 776 | 89.18% | 10.82% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 63 | 20.63% | 79.37% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 201 | 74.63% | 25.37% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519510509 | T->C | INTERGENIC | None |