Detailed information of SNP:
|
SNP ID:
sf0519511520(Gbrowse)
Chromosome: chr05 Position: 19511520 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.08% | 31.92% |
| All Indica | 793 | 93.69% | 6.31% |
| All Japonica | 497 | 21.73% | 78.27% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 91.62% | 8.38% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519511520 | T->A | INTERGENIC | None |