Detailed information of SNP:
|
SNP ID:
sf0519511684(Gbrowse)
Chromosome: chr05 Position: 19511684 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1292 | 89.09% | 10.91% |
| All Indica | 749 | 89.19% | 10.81% |
| All Japonica | 442 | 97.29% | 2.71% |
| Aus | 55 | 29.09% | 70.91% |
| Indica I | 365 | 95.07% | 4.93% |
| Indica II | 195 | 77.44% | 22.56% |
| Indica Intermediate | 189 | 89.95% | 10.05% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 46 | 73.91% | 26.09% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519511684 | C->T | INTERGENIC | None |