Detailed information of SNP:
|
SNP ID:
sf0519512405(Gbrowse)
Chromosome: chr05 Position: 19512405 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 95.92% | 4.08% |
| All Indica | 788 | 96.57% | 3.43% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 62 | 74.19% | 25.81% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519512405 | G->A | INTERGENIC | None |