Detailed information of SNP:
|
SNP ID:
sf0519582073(Gbrowse)
Chromosome: chr05 Position: 19582073 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.57% | 33.43% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519582073 | C->T | INTERGENIC | None |