Detailed information of SNP:
|
SNP ID:
sf0519605002(Gbrowse)
Chromosome: chr05 Position: 19605002 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.17% | 38.83% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519605002 | A->G | LOC_Os05g33480(LOC_Os05g33480.1) | Synonymous |