Detailed information of SNP:
|
SNP ID:
sf0519606022(Gbrowse)
Chromosome: chr05 Position: 19606022 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 90.98% | 9.02% |
| All Indica | 783 | 93.10% | 6.90% |
| All Japonica | 458 | 93.67% | 6.33% |
| Aus | 59 | 44.07% | 55.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 201 | 79.10% | 20.90% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 58 | 56.90% | 43.10% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519606022 | G->A | LOC_Os05g33480(LOC_Os05g33480.1) | Non-Synonymous SNP |