Detailed information of SNP:
|
SNP ID:
sf0519608457(Gbrowse)
Chromosome: chr05 Position: 19608457 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 92.45% | 7.55% |
| All Indica | 761 | 88.30% | 11.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 354 | 87.29% | 12.71% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 200 | 86.00% | 14.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519608457 | A->G | INTERGENIC | None |