Detailed information of SNP:
|
SNP ID:
sf0519608780(Gbrowse)
Chromosome: chr05 Position: 19608780 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 91.93% | 8.07% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 495 | 87.07% | 12.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 35.87% | 64.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519608780 | C->T | LOC_Os05g33490(LOC_Os05g33490.1) | Non-Synonymous SNP |