Detailed information of SNP:
|
SNP ID:
sf0519610264(Gbrowse)
Chromosome: chr05 Position: 19610264 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 90.84% | 9.16% |
| All Indica | 767 | 94.26% | 5.74% |
| All Japonica | 494 | 87.25% | 12.75% |
| Aus | 60 | 76.67% | 23.33% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 185 | 92.43% | 7.57% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519610264 | G->A | LOC_Os05g33490(LOC_Os05g33490.1) | Synonymous |