Detailed information of SNP:
|
SNP ID:
sf0519611225(Gbrowse)
Chromosome: chr05 Position: 19611225 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 83.61% | 16.39% |
| All Indica | 773 | 72.06% | 27.94% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 365 | 62.19% | 37.81% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 203 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519611225 | G->A | LOC_Os05g33490(LOC_Os05g33490.1) | Non-Synonymous SNP |