Detailed information of SNP:
|
SNP ID:
sf0519612283(Gbrowse)
Chromosome: chr05 Position: 19612283 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 58.69% | 41.31% |
| All Indica | 794 | 80.48% | 19.52% |
| All Japonica | 492 | 17.68% | 82.32% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 75.81% | 24.19% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519612283 | C->A | LOC_Os05g33490(LOC_Os05g33490.1) | Non-Synonymous SNP |