Detailed information of SNP:
|
SNP ID:
sf0519612488(Gbrowse)
Chromosome: chr05 Position: 19612488 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.00% | 6.00% |
| All Indica | 788 | 92.64% | 7.36% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 60 | 66.67% | 33.33% |
| Indica I | 370 | 90.27% | 9.73% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0519612488 | G->A | LOC_Os05g33490(LOC_Os05g33490.1) | Non-Synonymous SNP |